Accounting for Veterinary Clinics
You care for animals. We handle the numbers.
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Accounting for Veterinary Clinics in Canada

Most vet clinic owners are spending too much time trying to fix a broken accounting system instead of focusing on running their business A generalist accountant might file your taxes, but they often miss the leakage occurring in production pay calculations, inventory shrinkage, and deferred revenue from wellness plans. At Vertical CPA, we provide the specialized financial workflow required to turn a busy vet clinic into a high-margin asset.

A Virtual Finance Team Built for Modern Practices

Vertical CPA provides more than just tax returns. We offer a scalable accounting stack that integrates directly with your practice management software.

  • Practice Integration: We sync your bookkeeping with your PMS to ensure every procedure is captured.
  • Expansion & M&A: Planning a second location or a merger? We provide the financial modeling and due diligence you need to scale safely.
  • Dedicated Support: You get a dedicated team for setup and daily support, ensuring your “tech stack” stays automated and accurate.
Why clinics choose Vertical CPA

We Speak “Veterinary Finance”

Generalist accountants often struggle with clinic-specific nuances. We understand the moving parts that impact your bottom line:

  • Complex Revenue: Handling wellness plans, surgical deposits, and delayed insurance payouts.
  • Inventory & Overhead: Managing controlled drug logs and tracking professional fees that shrink your deposits.
  • Payroll Complexity: Accurately calculating production pay and managing relief vet payments.
Our Vet Clinics accounting services include:

Bookkeeping

Corporate tax filing

CRA audit assistance

Business modeling

Cash flow management

GST/HST filing

FP&A (Financial Planning & Analysis)

Financial planning

Personal tax filing

Taxes filing for sole proprietorships

What we do for you

Revenue and deposits
We will make sure that your practice totals tie to bank deposits and processor payouts. Fees and chargebacks are booked. Refunds and discounts will be categorized separately. Wellness plans and deposits are posted as deferred revenue, then earned as care is delivered.

HST and compliance
Clear codes for services, drugs, and food. Gift cards and deposits handled correctly. Filings tie back to PMS, processor, and bank deposit reports.

Cash flow and decisions
A 13 week cash forecast that reflects seasonality, leases, equipment purchases, and inventory purchases. When you plan for growth, we help you see the cash impact before you commit.

Tools we work with

Practice software like ezyVet, IDEXX Neo, AVImark, Cornerstone, Shepherd, and NaVetor. Payments with Moneris, Elavon, Square, and Stripe. Lab and pharmacy reports from IDEXX VetConnect, Antech, and Vetsource. Accounting in QuickBooks Online.

What clients say
Watch Rebecca’s Story
When Rebecca bought her veterinary hospital, she inherited disorganized finances and constant stress. We brought order and peace of mind, allowing her to focus on caring for her patients instead of worrying about accounting.
FAQs
How do we start?

Book a free consultation. We review your goals, systems, and timelines, then propose a clear plan and pricing.

Do I need to switch my practice software?

No. We connect to ezyVet, IDEXX Neo, AVImark, Cornerstone, Shepherd, and NaVetor, and post to QuickBooks Online.

Can you make my daily totals match bank deposits?

Yes. We tie PMS reports to processor payouts, record fees and chargebacks, and reconcile to the bank.

How do you handle HST on mixed invoices?

We set clear tax codes for services, drugs, food, gift cards, and deposits. Filings tie back to PMS, processor, and bank reports.

What about wellness plans and deposits?

We book deferred revenue and recognize it as care is delivered. Cancellations and refunds are handled cleanly.

How do you price services and how do we start?

Pricing is customized to volume, systems, and cleanup needs. See our pricing page and book a free consultation.